Jeramiah Smith

Research Interests:
Genome Biology
Vertebrate Evolution
Pluripotency
Cancer
Regeneration
biology
Education

Postdoctoral Fellow, U. Washington Dept. Genome Sciences & Benaroya Res. Inst. at Virginia Mason (2007 - 2011)
University of Kentucky, Ph.D. in Biology, 2007
Colorado State University, M.S. in Biology, 2002
Black Hills State University, B.S. in Biology, cum laude, 1998

Research

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CURRENTLY ACCEPTING GRADUATE STUDENTS - 2019/20 20/21 (FALL/SUMMER) FOR NSF and NIH-FUNDED RESEARCH ASSISTANT TO STUDY PROGRAMMED GENOME REARRANGEMENT

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CLICK HERE FOR SMITH LAB WEBPAGE

 

 

PubMed Publications*: 
  • RY Coley; JJ Smith; L Karliner; AE Idu; SJ Lee; S Fuller; R Lam; DE Barnes; S Dublin"External Validation of the eRADAR Risk Score for Detecting Undiagnosed Dementia in Two Real-World Healthcare Systems."Journal of general internal medicine(2022):Details. Full text
  • J Garcia-Aguilar; S Patil; MJ Gollub; JK Kim; JB Yuval; HM Thompson; FS Verheij; DM Omer; M Lee; RF Dunne; J Marcet; P Cataldo; B Polite; DO Herzig; D Liska; S Oommen; CM Friel; C Ternent; AL Coveler; S Hunt; A Gregory; MG Varma; BL Bello; JC Carmichael; J Krauss; A Gleisner; PB Paty; MR Weiser; GM Nash; E Pappou; JG Guillem; L Temple; IH Wei; M Widmar; S Lin; NH Segal; A Cercek; R Yaeger; JJ Smith; KA Goodman; AJ Wu; LB Saltz"Organ Preservation in Patients With Rectal Adenocarcinoma Treated With Total Neoadjuvant Therapy."Journal of clinical oncology : official journal of the American Society of Clinical Oncology40.23(2022):2546-2556.Details. Full text
  • AK Miller; N Timoshevskaya; JJ Smith; J Gillum; S Sharif; S Clarke; C Baker; J Kitson; NJ Gemmell; A Alexander"Population Genomics of New Zealand Pouched Lamprey (kanakana; piharau; Geotria australis)."The Journal of heredity113.4(2022):380-397.Details. Full text
  • KA Murach; BD Peck; RA Policastro; IJ Vechetti; DW Van Pelt; CM Dungan; LT Denes; X Fu; CR Brightwell; GE Zentner; EE Dupont-Versteegden; CI Richards; JJ Smith; CS Fry; JJ McCarthy; CA Peterson"Early satellite cell communication creates a permissive environment for long-term muscle growth."iScience24.4(2021):102372.Details. Full text
  • S Schloissnig; A Kawaguchi; S Nowoshilow; F Falcon; L Otsuki; P Tardivo; N Timoshevskaya; MC Keinath; JJ Smith; Voss SR; EM Tanaka"The giant axolotl genome uncovers the evolution, scaling, and transcriptional control of complex gene loci."Proceedings of the National Academy of Sciences of the United States of America118.15(2021):Details. Full text
  • JJ Smith; VA Timoshevskiy; C Saraceno"Programmed DNA Elimination in Vertebrates."Annual review of animal biosciences9.(2021):173-201.Details. Full text
  • AN Nail; JJ Smith; ML Peterson; BT Spear"Evolutionary Analysis of the Zinc Finger and Homeoboxes Family of Proteins Identifies Multiple Conserved Domains and a Common Early Chordate Ancestor."Genome biology and evolution12.3(2020):174-184.Details. Full text
  • D Hockman; Chong -Morrison V; SA Green; D Gavriouchkina; I Candido-Ferreira; ITC Ling; RM Williams; CT Amemiya; JJ Smith; ME Bronner; T Sauka-Spengler"A genome-wide assessment of the ancestral neural crest gene regulatory network."Nature communications10.1(2019):4689.Details. Full text
  • KP Gatto; JJ Smith; LB Lourenço"The mitochondrial genome of the endemic Brazilian paradoxical frog <i>Pseudis tocantins</i> (Hylidae)."Mitochondrial DNA. Part B, Resources3.2(2018):1106-1107.Details. Full text
  • CM Gómez; RM Woodcock; JJ Smith; RS Voss; JP Delgado"Using transcriptomics to enable a plethodontid salamander (Bolitoglossa ramosi) for limb regeneration research."BMC genomics19.1(2018):704.Details. Full text
  • JJ Smith"Programmed DNA Elimination: Keeping Germline Genes in Their Place."Current biology : CB28.10(2018):R601-R603.Details. Full text
  • PE Herman; A Papatheodorou; SA Bryant; CKM Waterbury; Herdy JR; AA Arcese; JD Buxbaum; JJ Smith; Morgan JR; O Bloom"Highly conserved molecular pathways, including Wnt signaling, promote functional recovery from spinal cord injury in lampreys."Scientific reports8.1(2018):742.Details. Full text
  • B Parang; AM Kaz; CW Barrett; SP Short; W Ning; CE Keating; MK Mittal; RD Naik; MK Washington; FL Revetta; JJ Smith; X Chen; KT Wilson; T Brand; DM Bader; WP Tansey; R Chen; TA Brentnall; WM Grady; CS Williams"BVES regulates c-Myc stability via PP2A and suppresses colitis-induced tumourigenesis."Gut66.5(2017):852-862.Details. Full text
  • López de Lomana; A Kaur; S Turkarslan; KD Beer; FD Mast; JJ Smith; JD Aitchison; NS Baliga"Adaptive Prediction Emerges Over Short Evolutionary Time Scales."Genome biology and evolution9.6(2017):1616-1623.Details. Full text
  • VA Timoshevskiy; RT Lampman; JE Hess; LL Porter; JJ Smith"Deep ancestry of programmed genome rearrangement in lampreys."Developmental biology429.1(2017):31-34.Details. Full text
  • Z Wang; SA Danziger; BD Heavner; S Ma; JJ Smith; S Li; T Herricks; E Simeonidis; NS Baliga; JD Aitchison; ND Price"Combining inferred regulatory and reconstructed metabolic networks enhances phenotype prediction in yeast."PLoS computational biology13.5(2017):e1005489.Details. Full text
  • DA Dillard; JP Avey; RF Robinson; JJ Smith; J Beals; SM Manson; KA Comtois"Demographic, Clinical, and Service Utilization Factors Associated with Suicide-Related Visits among Alaska Native and American Indian Adults."Suicide & life-threatening behavior47.1(2017):27-37.Details. Full text
  • SA Bryant; Herdy JR; CT Amemiya; JJ Smith"Characterization of Somatically-Eliminated Genes During Development of the Sea Lamprey (Petromyzon marinus)."Molecular biology and evolution33.9(2016):2337-44.Details. Full text
  • I Braasch; AR Gehrke; JJ Smith; K Kawasaki; T Manousaki; J Pasquier; A Amores; T Desvignes; P Batzel; J Catchen; AM Berlin; MS Campbell; D Barrell; KJ Martin; JF Mulley; Ravi V; AP Lee; T Nakamura; D Chalopin; S Fan; D Wcisel; C Cañestro; J Sydes; FE Beaudry; Y Sun; J Hertel; MJ Beam; M Fasold; M Ishiyama; J Johnson; S Kehr; M Lara; JH Letaw; GW Litman; RT Litman; M Mikami; T Ota; NR Saha; L Williams; PF Stadler; H Wang; JS Taylor; Q Fontenot; A Ferrara; SM Searle; B Aken; M Yandell; I Schneider; JA Yoder; JN Volff; A Meyer; CT Amemiya; B Venkatesh; PW Holland; Y Guiguen; J Bobe; NH Shubin; F Di Palma; J Alföldi; K Lindblad-Toh; JH Postlethwait"The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons."Nature genetics48.4(2016):427-37.Details. Full text
  • CT Amemiya; J Alföldi; AP Lee; S Fan; H Philippe; I Maccallum; I Braasch; T Manousaki; I Schneider; N Rohner; C Organ; D Chalopin; JJ Smith; M Robinson; RA Dorrington; M Gerdol; B Aken; MA Biscotti; M Barucca; D Baurain; AM Berlin; GL Blatch; F Buonocore; T Burmester; MS Campbell; A Canapa; JP Cannon; A Christoffels; G De Moro; AL Edkins; L Fan; AM Fausto; N Feiner; M Forconi; J Gamieldien; S Gnerre; A Gnirke; JV Goldstone; W Haerty; ME Hahn; U Hesse; S Hoffmann; J Johnson; SI Karchner; S Kuraku; M Lara; JZ Levin; GW Litman; E Mauceli; T Miyake; MG Mueller; DR Nelson; A Nitsche; E Olmo; T Ota; A Pallavicini; S Panji; B Picone; CP Ponting; SJ Prohaska; D Przybylski; NR Saha; Ravi V; FJ Ribeiro; T Sauka-Spengler; G Scapigliati; SM Searle; T Sharpe; O Simakov; PF Stadler; JJ Stegeman; K Sumiyama; D Tabbaa; H Tafer; J Turner-Maier; P van Heusden; S White; L Williams; M Yandell; H Brinkmann; JN Volff; CJ Tabin; N Shubin; M Schartl; DB Jaffe; JH Postlethwait; B Venkatesh; F Di Palma; ES Lander; A Meyer; K Lindblad-Toh"The African coelacanth genome provides insights into tetrapod evolution."Nature496.7445(2013):311-6.Details. Full text
  • JJ Smith; S Kuraku; C Holt; T Sauka-Spengler; N Jiang; MS Campbell; MD Yandell; T Manousaki; A Meyer; OE Bloom; Morgan JR; JD Buxbaum; R Sachidanandam; C Sims; AS Garruss; M Cook; R Krumlauf; LM Wiedemann; SA Sower; WA Decatur; JA Hall; CT Amemiya; NR Saha; KM Buckley; JP Rast; S Das; M Hirano; N McCurley; P Guo; N Rohner; CJ Tabin; P Piccinelli; G Elgar; M Ruffier; BL Aken; SM Searle; M Muffato; M Pignatelli; J Herrero; M Jones; CT Brown; YW Chung-Davidson; KG Nanlohy; SV Libants; CY Yeh; DW McCauley; JA Langeland; Z Pancer; B Fritzsch; PJ de Jong; B Zhu; LL Fulton; B Theising; P Flicek; ME Bronner; WC Warren; SW Clifton; RK Wilson; W Li"Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution."Nature genetics45.4(2013):415-21, 421e1-2.Details. Full text
  • JJ Smith; K Sumiyama; CT Amemiya"A living fossil in the genome of a living fossil: Harbinger transposons in the coelacanth genome."Molecular biology and evolution29.3(2012):985-93.Details. Full text
  • JJ Smith; C Baker; EE Eichler; CT Amemiya"Genetic consequences of programmed genome rearrangement."Current biology : CB22.16(2012):1524-9.Details. Full text
  • Voss SR; DK Kump; S Putta; N Pauly; A Reynolds; RJ Henry; S Basa; JA Walker; JJ Smith"Origin of amphibian and avian chromosomes by fission, fusion, and retention of ancestral chromosomes."Genome research21.8(2011):1306-12.Details. Full text
  • JJ Smith; NR Saha; CT Amemiya"Genome biology of the cyclostomes and insights into the evolutionary biology of vertebrate genomes."Integrative and comparative biology50.1(2010):130-7.Details. Full text
  • RB Page; MA Boley; JJ Smith; S Putta; Voss SR"Microarray analysis of a salamander hopeful monster reveals transcriptional signatures of paedomorphic brain development."BMC evolutionary biology10.(2010):199.Details. Full text
  • JJ Smith; AB Stuart; T Sauka-Spengler; SW Clifton; CT Amemiya"Development and analysis of a germline BAC resource for the sea lamprey, a vertebrate that undergoes substantial chromatin diminution."Chromosoma119.4(2010):381-9.Details. Full text
  • JJ Smith; F Antonacci; EE Eichler; CT Amemiya"Programmed loss of millions of base pairs from a vertebrate genome."Proceedings of the National Academy of Sciences of the United States of America106.27(2009):11212-7.Details. Full text
  • RB Page; Voss SR; AK Samuels; JJ Smith; S Putta; CK Beachy"Effect of thyroid hormone concentration on the transcriptional response underlying induced metamorphosis in the Mexican axolotl (Ambystoma)."BMC genomics9.(2008):78.Details. Full text
  • JJ Smith; Voss SR"Bird and mammal sex-chromosome orthologs map to the same autosomal region in a salamander (ambystoma)."Genetics177.1(2007):607-13.Details. Full text
  • RB Page; Monaghan JR; AK Samuels; JJ Smith; CK Beachy; Voss SR"Microarray analysis identifies keratin loci as sensitive biomarkers for thyroid hormone disruption in the salamander Ambystoma mexicanum."Comparative biochemistry and physiology. Toxicology & pharmacology : CBP145.1(2007):15-27.Details. Full text
  • Voss SR; JJ Smith"Evolution of salamander life cycles: a major-effect quantitative trait locus contributes to discrete and continuous variation for metamorphic timing."Genetics170.1(2005):275-81.Details. Full text
  • SA Danziger; LR Miller; K Singh; GA Whitney; ER Peskind; G Li; RJ Lipshutz; JD Aitchison; JJ Smith"An indicator cell assay for blood-based diagnostics."PloS one12.6(0):e0178608.Details. Full text
* Publications are automatically pulled from pubmed.gov based on a user-specific query. Results may include incorrect citations. See: Tutorial on improving PubMed results.